Search found 87 matches

by jwk
Wed Mar 26, 2025 6:35 pm
Forum: WebMO App (Apple and Android)
Topic: Charge not recognized in allylic cation (vs anion)
Replies: 5
Views: 71653

Re: Charge not recognized in allylic cation (vs anion)

I am still having trouble with MO calculations on carbocations (see also post on MO visualizations). But first consider t-butyl anion: Build C3C and set central atom charge to -1. Cleanup Mechanics - gives pyramidal central carbon. Thus WebMO recognizes the correct hybridization of that atom and the...
by jwk
Fri Mar 21, 2025 9:29 pm
Forum: View Molecular Orbitals
Topic: Viewing MOs with Various Engines
Replies: 2
Views: 27876

Re: Viewing MOs with Various Engines

Here is a strange result using the WebMO app on an ipad v10: Lookup, Import, "crystal violet" gives the Ar3C+ Cl- ion pair. Then calculate orbitals shows the LUMO that looks correct for Ar3C+ ion itself, i.e. with large lobe on the central C. Deleting the Cl- ion, then repeating calculate ...
by jwk
Sun Mar 16, 2025 6:31 pm
Forum: Feature Requests
Topic: real time parsing of ORCA optimization
Replies: 5
Views: 41800

Re: real time parsing of ORCA optimization

To be clear, since v 17 or so WebMO has included an interactive Geometry Sequence display that functions as described above. For Gaussian, MOPAC and xTB, the progress of optimizations is updated in real time. For a large systems or long optimization times this is extremely useful. But in the case of...
by jwk
Tue Jan 14, 2025 9:03 pm
Forum: WebMO 24
Topic: OpenMopac 23.0.3
Replies: 4
Views: 34665

Re: OpenMopac 23.0.3

For WebMO 23, edit the parse-mopac.cgi file as follows:
in line 50: change "MOPAC v22" to "MOPAC v23'
in line 51: change "2022" to "2023"
by jwk
Tue Dec 03, 2024 7:49 pm
Forum: Build Molecule
Topic: databases grayed out
Replies: 1
Views: 12966

databases grayed out

On my machine, using several different browsers, and on your WebMO demo, the Lookup, By Name menu shows databases grayed out. Search for "aspirin" fails. In fact several of these databases are online and working normally. What am I doing wrong?
by jwk
Tue Oct 15, 2024 10:25 pm
Forum: Feature Requests
Topic: xtb vtight option?
Replies: 4
Views: 56193

Re: xtb vtight option?

Thanks, JR. I see that option on the Advanced Tab of XTB in v. 24 of WebMO!
by jwk
Thu Sep 05, 2024 8:11 am
Forum: View Results
Topic: ORCA atomic charges
Replies: 3
Views: 43957

Re: ORCA atomic charges

In parse_orca.cgi (WebMO 23) changing "LOEWDIN" to "MULLIKEN" in line 278 gives the Mulliken charges in the Partial Charge table with the correct atom numbers. However, an extra line labeled "1" is seen at the bottom of the table, and the link to the ViewPartialCharge_m...
by jwk
Sat Aug 31, 2024 7:58 pm
Forum: View Results
Topic: ORCA atomic charges
Replies: 3
Views: 43957

Re: ORCA atomic charges

How might one edit the parse_orca.cgi file to recover Mulliken charges rather than Loewdin charges?
by jwk
Thu Apr 11, 2024 6:05 pm
Forum: Feature Requests
Topic: xtb vtight option?
Replies: 4
Views: 56193

Re: xtb vtight option?

Yes, this can be done by adding a few lines to the run_xtb.cgi file. Contact jwkeller@alaska.edu if you want the details.
by jwk
Thu Apr 11, 2024 1:18 am
Forum: Feature Requests
Topic: xtb vtight option?
Replies: 4
Views: 56193

Re: xtb vtight option?

In the meantime, can we just force xtb to do "--opt vtight" on all optimizations, rather than "--opt" ?